Gene: VV14G10540 (Vitis vinifera)

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Gene Identifier
VV14G10540
Transcript Identifier
VV14G10540.1
Gene Type
Coding gene
Location
chr14 : 116202-121451 : positive

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family
Subfamily
ORTHO03D009067
(28 genes in 25 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description (AnnoMine)
Phytochrome A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidGSVIVG01031354001

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009584IEAInterProdetection of visible light
GO:0018298IEAInterProprotein-chromophore linkage
GO:0007165IEAInterProsignal transduction
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0000160IEAInterProphosphorelay signal transduction system
GO:0010203ISOPLAZA Integrative Orthologyresponse to very low fluence red light stimulusAT1G09570
GO:0010201ISOPLAZA Integrative Orthologyresponse to continuous far red light stimulus by the high-irradiance response systemAT1G09570
GO:0017148ISOPLAZA Integrative Orthologynegative regulation of translationAT1G09570
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT1G09570
GO:0010161ISOPLAZA Integrative Orthologyred light signaling pathwayAT1G09570
GO:0046685ISOPLAZA Integrative Orthologyresponse to arsenic-containing substanceAT1G09570
GO:0009638ISOPLAZA Integrative OrthologyphototropismAT1G09570
GO:0009630ISOPLAZA Integrative OrthologygravitropismAT1G09570
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0004871IEAInterProsignal transducer activity
GO:0005524IEAInterProATP binding
GO:0000155IEAInterProphosphorelay sensor kinase activity
GO:0009883ISOPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT1G09570
GO:0031516ISOPLAZA Integrative Orthologyfar-red light photoreceptor activityAT1G09570
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT1G09570
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAInterPromembrane
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT1G09570
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT1G09570
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G09570

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR001294Phytochrome
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR013767PAS fold
IPR013516Phytochrome chromophore binding site
IPR003018GAF domain
IPR016132Phytochrome chromophore attachment domain
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR013654PAS fold-2
IPR000700PAS-associated, C-terminal
IPR005467Signal transduction histidine kinase, core
IPR013515Phytochrome, central region

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.