PLAZA 3.0 Dicots gene overview : TP6G33070

Gene: TP6G33070 (Thellungiella parvula)

Overview

Gene Identifier: TP6G33070
Transcript Identifier: TP6G33070.1
Gene Type: Coding gene
Location: ch6-6 : 8363991-8364902 : negative

Family

Gene family: HOM03D000017
(2380 genes in 31 species)
specific family
Subfamily: ORTHO03D027656
(5 genes in 5 species)
specific family
Duplication type: Block duplicate

Loading...please wait

Descriptions

Description: similar to AT5G10380|RING1

Description (AnnoMine): H2 finger protein

Identifiers

Identifier	Name
pid	Tp6g33070

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0051865	ISO	PLAZA Integrative Orthology	protein autoubiquitination	AT5G10380
GO:0043068	ISO	PLAZA Integrative Orthology	positive regulation of programmed cell death	AT5G10380
GO:0009617	ISO	PLAZA Integrative Orthology	response to bacterium	AT5G10380
GO:0002238	ISO	PLAZA Integrative Orthology	response to molecule of fungal origin	AT5G10380
GO:0010200	ISO	PLAZA Integrative Orthology	response to chitin	AT5G10380
GO:0012501	ISO	PLAZA Integrative Orthology	programmed cell death	AT5G10380
GO:0016567	ISO	PLAZA Integrative Orthology	protein ubiquitination	AT5G10380

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0004842	ISO	PLAZA Integrative Orthology	ubiquitin-protein ligase activity	AT5G10380
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000017
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000017
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000017
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03D000017
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000017

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT5G10380

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.