Gene: TC0009G01540 (Theobroma cacao)

Overview top

Gene Identifier
Transcript Identifier
Gene Type
Coding gene
scaffold_9 : 792294-797843 : negative


Gene family
(236 genes in 31 species)
specific family
(38 genes in 29 species)
specific family

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No default description found ...
Description of best ortholog(s):


Identifier Name





Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351IEAGenome Projecttranscription, DNA-templated
GO:0050832ISOPLAZA Integrative Orthologydefense response to fungusAT3G23780
GO:0050776ISOPLAZA Integrative Orthologyregulation of immune responseAT3G23780
GO:0035194ISOPLAZA Integrative Orthologyposttranscriptional gene silencing by RNAAT3G23780
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT3G23780
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT3G23780
GO:0031047ISOPLAZA Integrative Orthologygene silencing by RNAAT3G23780
GO:0016458ISOPLAZA Integrative Orthologygene silencingAT3G18090

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0003899IEAGenome ProjectDNA-directed RNA polymerase activity
GO:0032549IEAInterProribonucleoside binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT3G23780
GO:0016779IEAPLAZA Homologynucleotidyltransferase activityHOM03D000564
GO:0034062IEAPLAZA HomologyRNA polymerase activityHOM03D000564

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT3G23780
GO:0030880ISOPLAZA Integrative OrthologyRNA polymerase complexAT3G23780
GO:0000419ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT3G23780
GO:0005720ISOPLAZA Integrative Orthologynuclear heterochromatinAT3G23780
GO:0000418ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT3G23780
GO:0016020ISOPLAZA Integrative OrthologymembraneAT3G18090

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007641RNA polymerase Rpb2, domain 7
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6
IPR007121RNA polymerase, beta subunit, conserved site
IPR007647RNA polymerase Rpb2, domain 5
IPR014724RNA polymerase Rpb2, OB-fold
IPR015712DNA-directed RNA polymerase, subunit 2
IPR007646RNA polymerase Rpb2, domain 4
IPR007645RNA polymerase Rpb2, domain 3
IPR007644RNA polymerase, beta subunit, protrusion
IPR007642RNA polymerase Rpb2, domain 2

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.