Gene: TC0009G01540 (Theobroma cacao)

Overview top

Gene Identifier
TC0009G01540
Transcript Identifier
TC0009G01540.1
Gene Type
Coding gene
Location
scaffold_9 : 792294-797843 : negative

Family

Gene family
HOM03D000564
(236 genes in 31 species)
specific family
Subfamily
ORTHO03D003183
(38 genes in 29 species)
specific family

Loading...please wait

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Identifier Name

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351IEAGenome Projecttranscription, DNA-templated
GO:0050832ISOPLAZA Integrative Orthologydefense response to fungusAT3G23780
GO:0050776ISOPLAZA Integrative Orthologyregulation of immune responseAT3G23780
GO:0035194ISOPLAZA Integrative Orthologyposttranscriptional gene silencing by RNAAT3G23780
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT3G23780
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT3G23780
GO:0031047ISOPLAZA Integrative Orthologygene silencing by RNAAT3G23780
GO:0016458ISOPLAZA Integrative Orthologygene silencingAT3G18090

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0003899IEAGenome ProjectDNA-directed RNA polymerase activity
GO:0032549IEAInterProribonucleoside binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT3G23780
GO:0016779IEAPLAZA Homologynucleotidyltransferase activityHOM03D000564
GO:0034062IEAPLAZA HomologyRNA polymerase activityHOM03D000564

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT3G23780
GO:0030880ISOPLAZA Integrative OrthologyRNA polymerase complexAT3G23780
GO:0000419ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT3G23780
GO:0005720ISOPLAZA Integrative Orthologynuclear heterochromatinAT3G23780
GO:0000418ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT3G23780
GO:0016020ISOPLAZA Integrative OrthologymembraneAT3G18090

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR007641RNA polymerase Rpb2, domain 7
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6
IPR007121RNA polymerase, beta subunit, conserved site
IPR007647RNA polymerase Rpb2, domain 5
IPR014724RNA polymerase Rpb2, OB-fold
IPR015712DNA-directed RNA polymerase, subunit 2
IPR007646RNA polymerase Rpb2, domain 4
IPR007645RNA polymerase Rpb2, domain 3
IPR007644RNA polymerase, beta subunit, protrusion
IPR007642RNA polymerase Rpb2, domain 2

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.