PLAZA 3.0 Dicots gene overview : TC0001G00050

Gene: TC0001G00050 (Theobroma cacao)

Overview

Gene Identifier: TC0001G00050
Transcript Identifier: TC0001G00050.1
Gene Type: Coding gene
Location: scaffold_1 : 18315-26518 : positive

Family

Gene family: HOM03D000024
(2160 genes in 31 species)
specific family

Loading...please wait

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007018	IEA	Genome Project	microtubule-based movement
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03D000024
GO:0044763	IEA	PLAZA Homology	single-organism cellular process	HOM03D000024
GO:0006928	IEA	PLAZA Homology	cellular component movement	HOM03D000024
GO:0007017	IEA	PLAZA Homology	microtubule-based process	HOM03D000024
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000024

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003777	IEA	Genome Project	microtubule motor activity
GO:0005524	IEA	Genome Project	ATP binding
GO:0008017	IEA	InterPro	microtubule binding
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0008092	IEA	PLAZA Homology	cytoskeletal protein binding	HOM03D000024
GO:0005515	IEA	PLAZA Homology	protein binding	HOM03D000024
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03D000024
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03D000024
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03D000024
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03D000024
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000024
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03D000024
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03D000024
GO:0032403	IEA	PLAZA Homology	protein complex binding	HOM03D000024
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03D000024
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03D000024
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000024
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03D000024
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03D000024
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000024
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03D000024
GO:0003774	IEA	PLAZA Homology	motor activity	HOM03D000024
GO:0015631	IEA	PLAZA Homology	tubulin binding	HOM03D000024
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03D000024
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03D000024
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000024
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03D000024
GO:0017111	IEA	PLAZA Homology	nucleoside-triphosphatase activity	HOM03D000024
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03D000024
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000024
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000024
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000024
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03D000024

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005856	IEA	Genome Project	cytoskeleton
GO:0005871	IEA	InterPro	kinesin complex
GO:0005622	IEA	PLAZA Homology	intracellular	HOM03D000024
GO:0043226	IEA	PLAZA Homology	organelle	HOM03D000024
GO:0043228	IEA	PLAZA Homology	non-membrane-bounded organelle	HOM03D000024
GO:0032991	IEA	PLAZA Homology	macromolecular complex	HOM03D000024
GO:0043229	IEA	PLAZA Homology	intracellular organelle	HOM03D000024
GO:0044430	IEA	PLAZA Homology	cytoskeletal part	HOM03D000024
GO:0043234	IEA	PLAZA Homology	protein complex	HOM03D000024
GO:0043232	IEA	PLAZA Homology	intracellular non-membrane-bounded organelle	HOM03D000024
GO:0044464	IEA	PLAZA Homology	cell part	HOM03D000024
GO:0044424	IEA	PLAZA Homology	intracellular part	HOM03D000024
GO:0044422	IEA	PLAZA Homology	organelle part	HOM03D000024
GO:0015630	IEA	PLAZA Homology	microtubule cytoskeleton	HOM03D000024
GO:0005875	IEA	PLAZA Homology	microtubule associated complex	HOM03D000024
GO:0005623	IEA	PLAZA Homology	cell	HOM03D000024
GO:0044446	IEA	PLAZA Homology	intracellular organelle part	HOM03D000024

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001752	Kinesin, motor domain
IPR000857	MyTH4 domain
IPR027640	Kinesin-like protein
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR011254	Prismane-like
IPR019821	Kinesin, motor region, conserved site
IPR014352	FERM/acyl-CoA-binding protein, 3-helical bundle
IPR019749	Band 4.1 domain
IPR019748	FERM central domain
IPR000299	FERM domain
IPR018979	FERM, N-terminal
IPR011993	Pleckstrin homology-like domain

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.