Gene: ST11G024330 (Solanum tuberosum)
Overview 
- Gene Identifier
- ST11G024330
- Transcript Identifier
- ST11G024330.1
- Gene Type
- Coding gene
- Location
- chr11 : 41879950-41881526 : negative
Family
- Gene family
- Subfamily
- Duplication type
- Block duplicate
Descriptions
- Description
-
Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type
- Description (AnnoMine)
-
H2 finger protein ATL57
Identifiers
Identifier | Name |
---|---|
GeneName | gene:Sotub11g024330 |
pid | Sotub11g024330.1.1 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
- ...sequences.
- ...the multiple sequence alignment of the gene family with BioJS
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBIs protein database.
- ...the gene in Genomeview, a genome browser
- ...all colinear gene pairs.
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005515 | IEA | InterPro | protein binding | |
GO:0008270 | IEA | InterPro | zinc ion binding | |
GO:0043169 | IEA | PLAZA Homology | cation binding | HOM03D000017 |
GO:0005488 | IEA | PLAZA Homology | binding | HOM03D000017 |
GO:0043167 | IEA | PLAZA Homology | ion binding | HOM03D000017 |
GO:0046914 | IEA | PLAZA Homology | transition metal ion binding | HOM03D000017 |
GO:0046872 | IEA | PLAZA Homology | metal ion binding | HOM03D000017 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.