Gene: ST11G024190 (Solanum tuberosum)

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Gene Identifier
ST11G024190
Transcript Identifier
ST11G024190.1
Gene Type
Coding gene
Location
chr11 : 41706427-41720012 : negative

Family

Gene family
HOM03D001767
(94 genes in 31 species)
specific family
Subfamily
ORTHO03D011393
(23 genes in 20 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
DNA ligase (AHRD V1 **** B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase
Description (AnnoMine)
DNA ligase 1

Identifiers

Identifier Name
GeneNamegene:Sotub11g024190
pidSotub11g024190.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006260IEAInterProDNA replication
GO:0006281IEAInterProDNA repair
GO:0051103IEAInterProDNA ligation involved in DNA repair
GO:0006310IEAInterProDNA recombination
GO:0006302ISOPLAZA Integrative Orthologydouble-strand break repairAT1G08130
GO:0000012ISOPLAZA Integrative Orthologysingle strand break repairAT1G08130

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003909IEAInterProDNA ligase activity
GO:0003910IEAInterProDNA ligase (ATP) activity
GO:0005524IEAInterProATP binding
GO:0003677IEAInterProDNA binding
GO:0016886IEAPLAZA Homologyligase activity, forming phosphoric ester bondsHOM03D001767

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT1G08130
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G08130

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR012310DNA ligase, ATP-dependent, central
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012340Nucleic acid-binding, OB-fold
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR000977DNA ligase, ATP-dependent

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.