Gene: ST10G011220 (Solanum tuberosum)

Overview top

Gene Identifier
ST10G011220
Transcript Identifier
ST10G011220.1
Gene Type
Coding gene
Location
chr10 : 11951929-11956827 : negative

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family
Subfamily
ORTHO03D000373
(95 genes in 28 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Phytochrome A (AHRD V1 ***- Q3HM37_SOLTU); contains Interpro domain(s) IPR012129 Phytochrome A/B/C/D/E
Description
Phytochrome A
Description (AnnoMine)
Phytochrome A

Identifiers

Identifier Name
GeneNamegene:Sotub10g011220
pidSotub10g011220.1.1
uniprotP30733

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0018298IEAUniProtprotein-chromophore linkage1
GO:0009584IEAUniProtdetection of visible light1
GO:0007165IEAInterProsignal transduction
GO:0000160IEAInterProphosphorelay signal transduction system
GO:0006355IEAUniProtregulation of transcription, DNA-dependent1
GO:0007623IEAUniProtcircadian rhythm1
GO:0010018IEAUniProtfar-red light signaling pathway1
GO:0009630IEAUniProtgravitropism1
GO:0017148IEAUniProtnegative regulation of translation1
GO:0009640IEAUniProtphotomorphogenesis1
GO:0009638IEAUniProtphototropism1
GO:0017006IEAUniProtprotein-tetrapyrrole linkage1
GO:0010161IEAUniProtred light signaling pathway1
GO:0046685IEAUniProtresponse to arsenic-containing substance1
GO:0010201IEAUniProtresponse to continuous far red light stimulus by the high-irradiance response system1
GO:0010203IEAUniProtresponse to very low fluence red light stimulus1
GO:0023014IEAUniProtsignal transduction by phosphorylation1
GO:0006351IEAUniProttranscription, DNA-templated1
GO:0010017ISOPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010218ISOPLAZA Integrative Orthologyresponse to far red lightAT2G18790
GO:0010202ISOPLAZA Integrative Orthologyresponse to low fluence red light stimulusAT2G18790
GO:0006325ISOPLAZA Integrative Orthologychromatin organizationAT2G18790
GO:0015979ISOPLAZA Integrative OrthologyphotosynthesisAT2G18790
GO:0010148ISOPLAZA Integrative OrthologytranspirationAT2G18790
GO:0010374ISOPLAZA Integrative Orthologystomatal complex developmentAT2G18790
GO:0031347ISOPLAZA Integrative Orthologyregulation of defense responseAT2G18790
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0010617ISOPLAZA Integrative Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0010029ISOPLAZA Integrative Orthologyregulation of seed germinationAT2G18790
GO:0009687ISOPLAZA Integrative Orthologyabscisic acid metabolic processAT2G18790
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT2G18790
GO:0009649ISOPLAZA Integrative Orthologyentrainment of circadian clockAT2G18790
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0004871IEAInterProsignal transducer activity
GO:0005524IEAUniProtATP binding1
GO:0000155IEAUniProtphosphorelay sensor kinase activity1
GO:0031516IEAUniProtfar-red light photoreceptor activity1
GO:0009883ISOPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT4G16250 AT2G18790 AT1G09570
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT4G16250 AT2G18790 AT1G09570
GO:0031517ISOPLAZA Integrative Orthologyred light photoreceptor activityAT2G18790
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAUniProtmembrane1
GO:0005737IEAUniProtcytoplasm1
GO:0016604IEAUniProtnuclear body1
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G16250 AT2G18790 AT1G09570
GO:0005829ISOPLAZA Integrative OrthologycytosolAT2G18790

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR001294Phytochrome
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR000014PAS domain
IPR013767PAS fold
IPR000700PAS-associated, C-terminal
IPR013516Phytochrome chromophore binding site
IPR003018GAF domain
IPR013515Phytochrome, central region
IPR016132Phytochrome chromophore attachment domain
IPR013654PAS fold-2
IPR005467Signal transduction histidine kinase, core

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.