Gene: ST08G022900 (Solanum tuberosum)

Overview top

Gene Identifier
ST08G022900
Transcript Identifier
ST08G022900.1
Gene Type
Coding gene
Location
chr08 : 37379437-37397607 : positive

Family

Gene family
HOM03D000186
(550 genes in 31 species)
specific family
Subfamily
ORTHO03D007204
(31 genes in 23 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description
ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain
Description (AnnoMine)
Regulator of nonsense transcripts 1

Identifiers

Identifier Name
GeneNamegene:Sotub08g022900
pidSotub08g022900.1.1

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000184IEAInterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009611ISOPLAZA Integrative Orthologyresponse to woundingAT5G47010
GO:0009863ISOPLAZA Integrative Orthologysalicylic acid mediated signaling pathwayAT5G47010
GO:0048571ISOPLAZA Integrative Orthologylong-day photoperiodismAT5G47010
GO:0009744ISOPLAZA Integrative Orthologyresponse to sucroseAT5G47010
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT5G47010
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT5G47010
GO:0016246ISOPLAZA Integrative OrthologyRNA interferenceAT5G47010
GO:0010182ISOPLAZA Integrative Orthologysugar mediated signaling pathwayAT5G47010

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004386IEAInterProhelicase activity
GO:0008270IEAInterProzinc ion binding
GO:0005524IEAInterProATP binding
GO:0003677IEAInterProDNA binding
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000186

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAInterProcytoplasm
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G47010
GO:0000932ISOPLAZA Integrative Orthologycytoplasmic mRNA processing bodyAT5G47010
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G47010
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT5G47010

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR018999RNA helicase UPF1, UPF2-interacting domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.