Gene: ST08G006100 (Solanum tuberosum)

Overview top

Gene Identifier
ST08G006100
Transcript Identifier
ST08G006100.1
Gene Type
Coding gene
Location
chr08 : 1103317-1114107 : negative

Family

Gene family
HOM03D000186
(550 genes in 31 species)
specific family
Subfamily
ORTHO03D007204
(31 genes in 23 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Loading...please wait

Descriptions

Description
ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain
Description (AnnoMine)
Regulator of nonsense transcripts 1

Identifiers

Identifier Name
GeneNamegene:Sotub08g006100
pidSotub08g006100.1.1

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000184IEAInterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004386IEAInterProhelicase activity
GO:0008270IEAInterProzinc ion binding
GO:0005524IEAInterProATP binding
GO:0003677IEAInterProDNA binding
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000186

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAInterProcytoplasm

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR018999RNA helicase UPF1, UPF2-interacting domain
IPR014001Helicase, superfamily 1/2, ATP-binding domain

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.