Gene: ST04G013230 (Solanum tuberosum)

Overview top

Gene Identifier
ST04G013230
Transcript Identifier
ST04G013230.1
Gene Type
Coding gene
Location
chr04 : 8866308-8868173 : negative

Family

Gene family
HOM03D002186
(79 genes in 31 species)
specific family
Subfamily
ORTHO03D008477
(29 genes in 25 species)
specific family

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Descriptions

Description
MADS-box transcription factor (AHRD V1 *-*- Q9SED9_PICAB); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box
Description (AnnoMine)
directed RNA polymerases IV and V subunit 4

Identifiers

Identifier Name
GeneNamegene:Sotub04g013230
pidSotub04g013230.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0044237IEAInterProcellular metabolic process
GO:0006351IEAInterProtranscription, DNA-templated
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT4G15950
GO:0016246ISOPLAZA Integrative OrthologyRNA interferenceAT4G15950
GO:0010426ISOPLAZA Integrative OrthologyDNA methylation on cytosine within a CHH sequenceAT4G15950

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAInterPronucleotide binding
GO:0003899IEAInterProDNA-directed RNA polymerase activity
GO:0046983IEAInterProprotein dimerization activity
GO:0003824IEAInterProcatalytic activity
GO:0003677IEAInterProDNA binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D002186

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000419ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT4G15950
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G15950
GO:0000418ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT4G15950

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002100Transcription factor, MADS-box
IPR005574RNA polymerase II, Rpb4
IPR006590RNA polymerase II, Rpb4, core
IPR010997HRDC-like

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.