Gene: ST01G040990 (Solanum tuberosum)

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Gene Identifier
ST01G040990
Transcript Identifier
ST01G040990.1
Gene Type
Coding gene
Location
chr01 : 89355285-89360025 : positive

Family

Gene family
HOM03D000445
(283 genes in 31 species)
specific family
Subfamily
ORTHO03D000588
(76 genes in 29 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Serine hydroxymethyltransferase (AHRD V1 ***- A9PL12_POPTM); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase
Description (AnnoMine)
Serine hydroxymethyltransferase

Identifiers

Identifier Name
GeneNamegene:Sotub01g040990
pidSotub01g040990.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006544IEAInterProglycine metabolic process
GO:0006563IEAInterProL-serine metabolic process
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT1G36370
GO:0009069IEAPLAZA Homologyserine family amino acid metabolic processHOM03D000445
GO:0044281IEAPLAZA Homologysmall molecule metabolic processHOM03D000445
GO:0043436IEAPLAZA Homologyoxoacid metabolic processHOM03D000445
GO:0006520IEAPLAZA Homologycellular amino acid metabolic processHOM03D000445
GO:1901564IEAPLAZA Homologyorganonitrogen compound metabolic processHOM03D000445
GO:1901605IEAPLAZA Homologyalpha-amino acid metabolic processHOM03D000445
GO:0006082IEAPLAZA Homologyorganic acid metabolic processHOM03D000445
GO:0019752IEAPLAZA Homologycarboxylic acid metabolic processHOM03D000445

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030170IEAInterPropyridoxal phosphate binding
GO:0003824IEAInterProcatalytic activity
GO:0004372IEAInterProglycine hydroxymethyltransferase activity
GO:0048037IEAPLAZA Homologycofactor bindingHOM03D000445
GO:0016742IEAPLAZA Homologyhydroxymethyl-, formyl- and related transferase activityHOM03D000445
GO:0016741IEAPLAZA Homologytransferase activity, transferring one-carbon groupsHOM03D000445

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR001085Serine hydroxymethyltransferase
IPR015424Pyridoxal phosphate-dependent transferase
IPR019775WD40 repeat, conserved site
IPR019798Serine hydroxymethyltransferase, pyridoxal phosphate binding site
IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.