Gene: ST01G040360 (Solanum tuberosum)

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Gene Identifier
ST01G040360
Transcript Identifier
ST01G040360.1
Gene Type
Coding gene
Location
chr01 : 88823577-88835558 : positive

Family

Gene family
HOM03D002780
(65 genes in 31 species)
specific family
Subfamily
ORTHO03D001594
(48 genes in 29 species)
specific family

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Descriptions

Description
Upf3 regulator of nonsense transcripts-like protein B (AHRD V1 *--- Q2F5U6_BOMMO); contains Interpro domain(s) IPR005120 Regulator of nonsense-mediated decay, UPF3
Description (AnnoMine)
Regulator of nonsense transcripts UPF3

Identifiers

Identifier Name
GeneNamegene:Sotub01g040360
pidSotub01g040360.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009611ISOPLAZA Integrative Orthologyresponse to woundingAT1G33980
GO:0009863ISOPLAZA Integrative Orthologysalicylic acid mediated signaling pathwayAT1G33980
GO:0048571ISOPLAZA Integrative Orthologylong-day photoperiodismAT1G33980
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT1G33980
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT1G33980
GO:0000184ISOPLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decayAT1G33980

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAInterPronucleotide binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D002780

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT1G33980

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005120Regulator of nonsense-mediated decay, UPF3
IPR012677Nucleotide-binding, alpha-beta plait

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.