Gene: SL06G062980 (Solanum lycopersicum)

Overview top

Gene Identifier
SL06G062980
Transcript Identifier
SL06G062980.1
Gene Type
Coding gene
Location
ch06 : 36140594-36142839 : positive

Family

Gene family
HOM03D002967
(61 genes in 31 species)
specific family
Subfamily
ORTHO03D003340
(38 genes in 29 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA)%3B contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein%2C eukaryotic and archaea-type%2C core
Description (AnnoMine)
Sm-like protein LSm1

Identifiers

Identifier Name
pidSolyc06g062980.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016070ISOPLAZA Integrative OrthologyRNA metabolic processAT1G19120 AT3G14080

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000339IEAGenome ProjectRNA cap binding
GO:0005515IEAGenome Projectprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005732IEAPLAZA Homologysmall nucleolar ribonucleoprotein complexHOM03D002967
GO:0000932ISOPLAZA Integrative Orthologycytoplasmic mRNA processing bodyAT1G19120 AT3G14080

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR010920Like-Sm (LSM) domain
IPR006649Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR001163Ribonucleoprotein LSM domain

Mapman id Description
27.1RNA.processing
No SignalP domains detected for this gene.