PLAZA 3.0 Dicots gene overview : SL03G119050

Gene: SL03G119050 (Solanum lycopersicum)

Overview

Gene Identifier: SL03G119050
Transcript Identifier: SL03G119050.1
Gene Type: Coding gene
Location: ch03 : 61811525-61822254 : negative

Family

Gene family: HOM03D120893
(orphan gene)
specific family

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Descriptions

Description: Myb (AHRD V1 *-*- Q948S5_TOBAC)%3B contains Interpro domain(s) IPR015495 Myb transcription factor

Identifiers

Identifier	Name
pid	Solyc03g119050.2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006508	IEA	Genome Project	proteolysis
GO:0006355	IEA	Genome Project	regulation of transcription, DNA-dependent

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	Genome Project	DNA binding
GO:0003682	IEA	InterPro	chromatin binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeodomain-like
IPR017877	Myb-like domain

Mapman id	Description
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family

No SignalP domains detected for this gene.