Gene: SL03G019940 (Solanum lycopersicum)

Overview top

Gene Identifier
SL03G019940
Transcript Identifier
SL03G019940.1
Gene Type
Coding gene
Location
ch03 : 6810660-6817561 : positive

Family

Gene family
HOM03D001110
(138 genes in 31 species)
specific family

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Descriptions

Description
Asparaginyl-tRNA synthetase (AHRD V1 **** D6YS69_WADCW)%3B contains Interpro domain(s) IPR004522 Asparaginyl-tRNA synthetase%2C class IIb
Description (AnnoMine)
Asparagine--tRNA ligase

Identifiers

Identifier Name
pidSolyc03g019940.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006421IEAInterProasparaginyl-tRNA aminoacylation
GO:0006418IEAInterProtRNA aminoacylation for protein translation
GO:0043038IEAPLAZA Homologyamino acid activationHOM03D001110
GO:0043039IEAPLAZA HomologytRNA aminoacylationHOM03D001110
GO:0048481ISOPLAZA Integrative Orthologyovule developmentAT4G17300

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676IEAGenome Projectnucleic acid binding
GO:0004816IEAGenome Projectasparagine-tRNA ligase activity
GO:0042802IEAGenome Projectidentical protein binding
GO:0000166IEAInterPronucleotide binding
GO:0005524IEAInterProATP binding
GO:0004812IEAInterProaminoacyl-tRNA ligase activity
GO:0016875IEAPLAZA Homologyligase activity, forming carbon-oxygen bondsHOM03D001110
GO:0016876IEAPLAZA Homologyligase activity, forming aminoacyl-tRNA and related compoundsHOM03D001110

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAGenome Projectcytoplasm
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT4G17300
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT4G17300
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT4G17300

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006195Aminoacyl-tRNA synthetase, class II
IPR004522Asparagine-tRNA ligase
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340Nucleic acid-binding, OB-fold
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like

Mapman id Description
29.1.22protein.aa activation.asparagine-tRNA ligase
No SignalP domains detected for this gene.