Gene: SL02G079740 (Solanum lycopersicum)

Overview top

Gene Identifier
SL02G079740
Transcript Identifier
SL02G079740.1
Gene Type
Coding gene
Location
ch02 : 38763924-38765039 : positive

Family

Gene family
HOM03D000061
(1331 genes in 31 species)
specific family
Subfamily
ORTHO03D004815
(35 genes in 27 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
U-box domain-containing protein (Fragment) (AHRD V1 ***- B1P3P0_ARAHA)%3B contains Interpro domain(s) IPR011989 Armadillo-like helical
Description (AnnoMine)
U-box domain-containing protein 8

Identifiers

Identifier Name
pidSolyc02g079740.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016567IEAInterProprotein ubiquitination
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000061
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000061
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03D000061
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000061
GO:0009987IEAPLAZA Homologycellular processHOM03D000061
GO:0032446IEAPLAZA Homologyprotein modification by small protein conjugationHOM03D000061
GO:0070647IEAPLAZA Homologyprotein modification by small protein conjugation or removalHOM03D000061
GO:0043412IEAPLAZA Homologymacromolecule modificationHOM03D000061
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000061
GO:0044267IEAPLAZA Homologycellular protein metabolic processHOM03D000061
GO:0006464IEAPLAZA Homologycellular protein modification processHOM03D000061
GO:0036211IEAPLAZA Homologyprotein modification processHOM03D000061
GO:0019538IEAPLAZA Homologyprotein metabolic processHOM03D000061

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005488IEAGenome Projectbinding
GO:0005515IEAInterProprotein binding
GO:0004842IEAInterProubiquitin-protein ligase activity
GO:0016874IEAPLAZA Homologyligase activityHOM03D000061
GO:0019787IEAPLAZA Homologysmall conjugating protein ligase activityHOM03D000061
GO:0016881IEAPLAZA Homologyacid-amino acid ligase activityHOM03D000061
GO:0016879IEAPLAZA Homologyligase activity, forming carbon-nitrogen bondsHOM03D000061

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000151IEAGenome Projectubiquitin ligase complex
GO:0005622IEAPLAZA HomologyintracellularHOM03D000061
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03D000061
GO:1902494IEAPLAZA Homologycatalytic complexHOM03D000061
GO:0005623IEAPLAZA HomologycellHOM03D000061
GO:0043234IEAPLAZA Homologyprotein complexHOM03D000061
GO:0044464IEAPLAZA Homologycell partHOM03D000061
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000061

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR003613U box domain
IPR016024Armadillo-type fold
IPR000225Armadillo
IPR011989Armadillo-like helical

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.