Gene: SL02G067650 (Solanum lycopersicum)

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Gene Identifier
SL02G067650
Transcript Identifier
SL02G067650.1
Gene Type
Coding gene
Location
ch02 : 32355651-32357075 : positive

Family

Gene family
HOM03D000052
(1449 genes in 30 species)
specific family
Subfamily
ORTHO03D000276
(111 genes in 27 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
Polygalacturonase 1 (AHRD V1 ***- O22311_SOLLC)%3B contains Interpro domain(s) IPR012334 Pectin lyase fold
Description (AnnoMine)
Probable polygalacturonase At2g43860

Identifiers

Identifier Name
pidSolyc02g067650.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975IEAGenome Projectcarbohydrate metabolic process
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000052
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000052
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000052

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650IEAInterPropolygalacturonase activity
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000052
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03D000052
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000052
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03D000052

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011050Pectin lyase fold/virulence factor
IPR006626Parallel beta-helix repeat
IPR012334Pectin lyase fold
IPR000743Glycoside hydrolase, family 28

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network