Gene: SL01G109850 (Solanum lycopersicum)

Overview top

Gene Identifier
SL01G109850
Transcript Identifier
SL01G109850.1
Gene Type
Coding gene
Location
ch01 : 88449222-88454648 : negative

Family

Gene family
HOM03D001351
(115 genes in 31 species)
specific family
Subfamily
ORTHO03D002293
(42 genes in 30 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
Diaminopimelate decarboxylase (AHRD V1 **** D2DKE7_SOYBN)%3B contains Interpro domain(s) IPR002986 Diaminopimelate decarboxylase
Description (AnnoMine)
Probable diaminopimelate decarboxylase, chloroplastic

Identifiers

Identifier Name
pidSolyc01g109850.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009089IEAGenome Projectlysine biosynthetic process via diaminopimelate
GO:0006231IEAPLAZA HomologydTMP biosynthetic processHOM03D001351
GO:0046073IEAPLAZA HomologydTMP metabolic processHOM03D001351
GO:0006545IEAPLAZA Homologyglycine biosynthetic processHOM03D001351
GO:0055114IEAPLAZA Homologyoxidation-reduction processHOM03D001351

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003824IEAGenome Projectcatalytic activity
GO:0004040IEAGenome Projectamidase activity
GO:0008836IEAGenome Projectdiaminopimelate decarboxylase activity
GO:0004799IEAPLAZA Homologythymidylate synthase activityHOM03D001351
GO:0004146IEAPLAZA Homologydihydrofolate reductase activityHOM03D001351
GO:0042083IEAPLAZA Homology5,10-methylenetetrahydrofolate-dependent methyltransferase activityHOM03D001351

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G11880
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT5G11880 AT3G14390
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT5G11880

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002986Diaminopimelate decarboxylase, LysA
IPR009006Alanine racemase/group IV decarboxylase, C-terminal
IPR000183Ornithine/DAP/Arg decarboxylase
IPR022653Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site
IPR022644Orn/DAP/Arg decarboxylase 2, N-terminal
IPR022643Orn/DAP/Arg decarboxylase 2, C-terminal
IPR022657Orn/DAP/Arg decarboxylase 2, conserved site

Mapman id Description
13.1.3.5.5amino acid metabolism.synthesis.aspartate family.lysine.diaminopimelate decarboxylase
No SignalP domains detected for this gene.