Gene: SL01G096390 (Solanum lycopersicum)

Overview top

Gene Identifier
SL01G096390
Transcript Identifier
SL01G096390.1
Gene Type
Coding gene
Location
ch01 : 79236257-79259575 : positive

Family

Gene family
HOM03D000511
(254 genes in 31 species)
specific family
Subfamily
ORTHO03D001050
(59 genes in 26 species)
specific family

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Descriptions

Description
DNA-directed RNA polymerase (AHRD V1 ***- D7LEE8_ARALY)%3B contains Interpro domain(s) IPR006592 RNA polymerase%2C N-terminal
Description (AnnoMine)
polymerase V subunit 1

Identifiers

Identifier Name
pidSolyc01g096390.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351IEAGenome Projecttranscription, DNA-templated
GO:0009308IEAInterProamine metabolic process
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT2G40030
GO:0035194ISOPLAZA Integrative Orthologyposttranscriptional gene silencing by RNAAT2G40030
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT2G40030

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0048038IEAInterProquinone binding
GO:0005507IEAInterProcopper ion binding
GO:0003899IEAInterProDNA-directed RNA polymerase activity
GO:0003677IEAInterProDNA binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT2G40030
GO:0046914IEAPLAZA Homologytransition metal ion bindingHOM03D000511
GO:0034062IEAPLAZA HomologyRNA polymerase activityHOM03D000511
GO:0016779IEAPLAZA Homologynucleotidyltransferase activityHOM03D000511

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G40030
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G40030
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G40030
GO:0030880ISOPLAZA Integrative OrthologyRNA polymerase complexAT2G40030
GO:0000419ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT2G40030
GO:0000418ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT2G40030

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007080RNA polymerase Rpb1, domain 1
IPR007081RNA polymerase Rpb1, domain 5
IPR006592RNA polymerase, N-terminal
IPR021602Protein of unknown function DUF3223
IPR007066RNA polymerase Rpb1, domain 3
IPR000722RNA polymerase, alpha subunit
IPR015801Copper amine oxidase, N2/N3-terminal

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.