Gene: SL01G005540 (Solanum lycopersicum)

Overview top

Gene Identifier
SL01G005540
Transcript Identifier
SL01G005540.1
Gene Type
Coding gene
Location
ch01 : 360095-370339 : negative

Family

Gene family
HOM03D001316
(118 genes in 31 species)
specific family
Subfamily
ORTHO03D011217
(24 genes in 23 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Lysyl-tRNA synthetase (AHRD V1 ***- B9SBP3_RICCO)%3B contains Interpro domain(s) IPR002313 Lysyl-tRNA synthetase%2C class II
Description (AnnoMine)
Lysine--tRNA ligase

Identifiers

Identifier Name
pidSolyc01g005540.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006430IEAInterProlysyl-tRNA aminoacylation
GO:0006418IEAInterProtRNA aminoacylation for protein translation
GO:0048481ISOPLAZA Integrative Orthologyovule developmentAT3G13490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676IEAGenome Projectnucleic acid binding
GO:0000166IEAInterPronucleotide binding
GO:0004824IEAInterProlysine-tRNA ligase activity
GO:0005524IEAInterProATP binding
GO:0004812IEAInterProaminoacyl-tRNA ligase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAGenome Projectcytoplasm
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT3G13490
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT3G13490

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006195Aminoacyl-tRNA synthetase, class II
IPR012340Nucleic acid-binding, OB-fold
IPR018149Lysyl-tRNA synthetase, class II, C-terminal
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like
IPR002313Lysine-tRNA ligase, class II
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)

Mapman id Description
29.1.6protein.aa activation.lysine-tRNA ligase
No SignalP domains detected for this gene.