PLAZA 3.0 Dicots gene overview : SL00G005480

Gene: SL00G005480 (Solanum lycopersicum)

Overview

Gene Identifier: SL00G005480
Transcript Identifier: SL00G005480.1
Gene Type: Coding gene
Location: ch00 : 2612588-2614203 : positive

Family

Gene family: HOM03D000071
(1215 genes in 31 species)
specific family

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Descriptions

Description: Ubiquitin carrier protein (AHRD V1 *-*- A5B6X4_VITVI)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2

Description (AnnoMine): SUMO-conjugating enzyme UBC9

Identifiers

Identifier	Name
pid	Solyc00g005480.1.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0043687	IEA	Genome Project	post-translational protein modification

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016881	IEA	PLAZA Homology	acid-amino acid ligase activity	HOM03D000071
GO:0016874	IEA	PLAZA Homology	ligase activity	HOM03D000071
GO:0016879	IEA	PLAZA Homology	ligase activity, forming carbon-nitrogen bonds	HOM03D000071
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000071

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.unknown

No SignalP domains detected for this gene.