PLAZA 3.0 Dicots gene overview : RC32526G00010

Gene: RC32526G00010 (Ricinus communis)

Overview

Gene Identifier: RC32526G00010
Transcript Identifier: RC32526G00010.1
Gene Type: Coding gene
Location: 32526 : 96-542 : positive

Family

Gene family: HOM03D073111
(orphan gene)
specific family

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Descriptions

Description (AnnoMine): T4-type lysozyme

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
gene	32526.t000001
name	32526.m000035

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009253	IEA	InterPro	peptidoglycan catabolic process
GO:0016998	IEA	InterPro	cell wall macromolecule catabolic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003796	IEA	InterPro	lysozyme activity

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR023347	Lysozyme domain
IPR023346	Lysozyme-like domain
IPR002196	Glycoside hydrolase, family 24

Mapman id	Description
35.2	not assigned.unknown

No SignalP domains detected for this gene.