Gene: RC30128G03840 (Ricinus communis)

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Gene Identifier
RC30128G03840
Transcript Identifier
RC30128G03840.1
Gene Type
Coding gene
Location
30128 : 2079834-2084314 : negative

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family
Subfamily
ORTHO03D000373
(95 genes in 28 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
Phytochrome A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
gene30128.t000458
name30128.m008997

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007165IEAGenome Projectsignal transduction
GO:0007600IEAGenome Projectsensory perception
GO:0018298IEAGenome Projectprotein-chromophore linkage
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0018106IEAGenome Projectpeptidyl-histidine phosphorylation
GO:0009585IEAGenome Projectred, far-red light phototransduction
GO:0017006IEAGenome Projectprotein-tetrapyrrole linkage
GO:0009584IEAInterProdetection of visible light
GO:0010017ISOPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010218ISOPLAZA Integrative Orthologyresponse to far red lightAT2G18790
GO:0010202ISOPLAZA Integrative Orthologyresponse to low fluence red light stimulusAT2G18790
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT2G18790 AT1G09570
GO:0006325ISOPLAZA Integrative Orthologychromatin organizationAT2G18790
GO:0010374ISOPLAZA Integrative Orthologystomatal complex developmentAT2G18790
GO:0015979ISOPLAZA Integrative OrthologyphotosynthesisAT2G18790
GO:0010148ISOPLAZA Integrative OrthologytranspirationAT2G18790
GO:0031347ISOPLAZA Integrative Orthologyregulation of defense responseAT2G18790
GO:0010617ISOPLAZA Integrative Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0010161ISOPLAZA Integrative Orthologyred light signaling pathwayAT2G18790 AT1G09570
GO:0010029ISOPLAZA Integrative Orthologyregulation of seed germinationAT2G18790
GO:0009687ISOPLAZA Integrative Orthologyabscisic acid metabolic processAT2G18790
GO:0009630ISOPLAZA Integrative OrthologygravitropismAT2G18790 AT1G09570
GO:0009638ISOPLAZA Integrative OrthologyphototropismAT2G18790 AT1G09570
GO:0009649ISOPLAZA Integrative Orthologyentrainment of circadian clockAT2G18790
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT2G18790
GO:0010203ISOPLAZA Integrative Orthologyresponse to very low fluence red light stimulusAT1G09570
GO:0010201ISOPLAZA Integrative Orthologyresponse to continuous far red light stimulus by the high-irradiance response systemAT1G09570
GO:0017148ISOPLAZA Integrative Orthologynegative regulation of translationAT1G09570
GO:0046685ISOPLAZA Integrative Orthologyresponse to arsenic-containing substanceAT1G09570
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004871IEAGenome Projectsignal transducer activity
GO:0008020IEAGenome ProjectG-protein coupled photoreceptor activity
GO:0000155IEAGenome Projectphosphorelay sensor kinase activity
GO:0004673IEAGenome Projectprotein histidine kinase activity
GO:0005524IEAGenome ProjectATP binding
GO:0009881IEAGenome Projectphotoreceptor activity
GO:0042803IEAGenome Projectprotein homodimerization activity
GO:0005515IEAInterProprotein binding
GO:0009883ISOPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT4G16250 AT2G18790 AT1G09570
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT4G16250 AT2G18790 AT1G09570
GO:0031517ISOPLAZA Integrative Orthologyred light photoreceptor activityAT2G18790
GO:0031516ISOPLAZA Integrative Orthologyfar-red light photoreceptor activityAT2G18790 AT1G09570
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAGenome Projectmembrane
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G16250 AT2G18790 AT1G09570
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G18790 AT1G09570
GO:0005829ISOPLAZA Integrative OrthologycytosolAT2G18790
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT1G09570

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR001294Phytochrome
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR003018GAF domain
IPR005467Signal transduction histidine kinase, core
IPR013767PAS fold
IPR016132Phytochrome chromophore attachment domain
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR013515Phytochrome, central region
IPR013516Phytochrome chromophore binding site
IPR013654PAS fold-2

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.