Gene: RC29628G00350 (Ricinus communis)

Overview top

Gene Identifier
RC29628G00350
Transcript Identifier
RC29628G00350.1
Gene Type
Coding gene
Location
29628 : 159757-171795 : positive

Family

Gene family
HOM03D000186
(550 genes in 31 species)
specific family

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Descriptions

Description (AnnoMine)
Regulator of nonsense transcripts 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
gene29628.t000035
name29628.m000781

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000184IEAInterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0010182ISOPLAZA Integrative Orthologysugar mediated signaling pathwayAT5G47010
GO:0016246ISOPLAZA Integrative OrthologyRNA interferenceAT5G47010
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT5G47010
GO:0009744ISOPLAZA Integrative Orthologyresponse to sucroseAT5G47010
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT5G47010
GO:0048571ISOPLAZA Integrative Orthologylong-day photoperiodismAT5G47010
GO:0009611ISOPLAZA Integrative Orthologyresponse to woundingAT5G47010
GO:0009863ISOPLAZA Integrative Orthologysalicylic acid mediated signaling pathwayAT5G47010

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004386IEAInterProhelicase activity
GO:0008270IEAInterProzinc ion binding
GO:0005524IEAInterProATP binding
GO:0003677IEAInterProDNA binding
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000186

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAInterProcytoplasm
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT5G47010
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G47010
GO:0000932ISOPLAZA Integrative Orthologycytoplasmic mRNA processing bodyAT5G47010
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G47010

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR018999RNA helicase UPF1, UPF2-interacting domain
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
27.1.2RNA.processing.RNA helicase
No SignalP domains detected for this gene.