Gene: PT18G05020 (Populus trichocarpa)

Overview top

Gene Identifier
PT18G05020
Transcript Identifier
PT18G05020.1
Gene Type
Coding gene
Location
Chr18 : 5160435-5164482 : positive

Family

Gene family
HOM03D000482
(266 genes in 31 species)
specific family
Subfamily
ORTHO03D006958
(32 genes in 26 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine)
PHD finger protein ALFIN-LIKE
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.018G050200.1
idPAC:27010249

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000482
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000482
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000482
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000482
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000482
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03D000482
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000482
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000482
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000482
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000482
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000482
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000482
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000482
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000482
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000482
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000482
GO:0006351IEAPLAZA Homologytranscription, DNA-templatedHOM03D000482
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000482
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000482
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000482
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000482
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000482
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03D000482

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0042393IEAInterProhistone binding
GO:0008270IEAInterProzinc ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT5G20510 AT3G42790

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR011011Zinc finger, FYVE/PHD-type
IPR001965Zinc finger, PHD-type
IPR019786Zinc finger, PHD-type, conserved site
IPR019787Zinc finger, PHD-finger
IPR021998Alfin

Mapman id Description
27.3.2RNA.regulation of transcription.Alfin-like
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBAlfin-like