PLAZA 3.0 Dicots gene overview : PT16G05820

Gene: PT16G05820 (Populus trichocarpa)

Overview

Gene Identifier: PT16G05820
Transcript Identifier: PT16G05820.1
Gene Type: Coding gene
Location: Chr16 : 3938883-3940225 : positive

Family

Gene family: HOM03D000014
(2794 genes in 31 species)
specific family
Subfamily: ORTHO03D003669
(37 genes in 24 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description (AnnoMine): Lignin-forming anionic peroxidase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Potri.016G058200.1
id	PAC:27013269

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006979	IEA	Genome Project	response to oxidative stress
GO:0055114	IEA	Genome Project	oxidation-reduction process
GO:0009908	ISO	PLAZA Integrative Orthology	flower development	AT5G06720
GO:0002215	ISO	PLAZA Integrative Orthology	defense response to nematode	AT5G06720
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000014
GO:0006950	IEA	PLAZA Homology	response to stress	HOM03D000014
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03D000014
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000014
GO:0050896	IEA	PLAZA Homology	response to stimulus	HOM03D000014

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004601	IEA	Genome Project	peroxidase activity
GO:0020037	IEA	Genome Project	heme binding
GO:0016209	IEA	PLAZA Homology	antioxidant activity	HOM03D000014
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000014
GO:0046906	IEA	PLAZA Homology	tetrapyrrole binding	HOM03D000014
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000014
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000014
GO:0016491	IEA	PLAZA Homology	oxidoreductase activity	HOM03D000014
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000014
GO:0016684	IEA	PLAZA Homology	oxidoreductase activity, acting on peroxide as acceptor	HOM03D000014

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005794	ISO	PLAZA Integrative Orthology	Golgi apparatus	AT5G06720
GO:0005774	ISO	PLAZA Integrative Orthology	vacuolar membrane	AT5G06730

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002016	Haem peroxidase, plant/fungal/bacterial
IPR000823	Plant peroxidase
IPR019794	Peroxidase, active site
IPR010255	Haem peroxidase
IPR019793	Peroxidases heam-ligand binding site

Mapman id	Description
26.12	misc.peroxidases

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network