PLAZA 3.0 Dicots gene overview : PT04G00300

Gene: PT04G00300 (Populus trichocarpa)

Overview

Gene Identifier: PT04G00300
Transcript Identifier: PT04G00300.1
Gene Type: Coding gene
Location: Chr04 : 203056-204804 : negative

Family

Gene family: HOM03D000012
(2924 genes in 31 species)
specific family
Subfamily: ORTHO03D000481
(84 genes in 27 species)
specific family
Duplication type: Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine): aminocyclopropane-1-carboxylate oxidase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Potri.004G003000.1
id	PAC:26992161

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Genome Project	oxidation-reduction process
GO:0009620	ISO	PLAZA Tree-based Orthology	response to fungus	AT1G05010
GO:0071398	ISO	PLAZA Tree-based Orthology	cellular response to fatty acid	AT1G05010
GO:0009693	ISO	PLAZA Tree-based Orthology	ethylene biosynthetic process	AT1G05010
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03D000012
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000012
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000012

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016491	IEA	Genome Project	oxidoreductase activity
GO:0016706	IEA	Genome Project	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0051213	IEA	PLAZA Homology	dioxygenase activity	HOM03D000012
GO:0016705	IEA	PLAZA Homology	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	HOM03D000012
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000012

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR026992	Non-haem dioxygenase N-terminal domain
IPR027443	Isopenicillin N synthase-like
IPR005123	Oxoglutarate/iron-dependent dioxygenase

Mapman id	Description
17.5.1	hormone metabolism.ethylene.synthesis-degradation

No SignalP domains detected for this gene.