Gene: PT03G08640 (Populus trichocarpa)

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Gene Identifier
PT03G08640
Transcript Identifier
PT03G08640.1
Gene Type
Coding gene
Location
Chr03 : 11389213-11401962 : negative

Family

Gene family
HOM03D000186
(550 genes in 31 species)
specific family
Subfamily
ORTHO03D007204
(31 genes in 23 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Regulator of nonsense transcripts 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.003G086400.1
idPAC:26999142

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000184IEAGenome Projectnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009863ISOPLAZA Integrative Orthologysalicylic acid mediated signaling pathwayAT5G47010
GO:0009611ISOPLAZA Integrative Orthologyresponse to woundingAT5G47010
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT5G47010
GO:0048571ISOPLAZA Integrative Orthologylong-day photoperiodismAT5G47010
GO:0009744ISOPLAZA Integrative Orthologyresponse to sucroseAT5G47010
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT5G47010
GO:0016246ISOPLAZA Integrative OrthologyRNA interferenceAT5G47010
GO:0010182ISOPLAZA Integrative Orthologysugar mediated signaling pathwayAT5G47010

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0005524IEAGenome ProjectATP binding
GO:0016787IEAGenome Projecthydrolase activity
GO:0004386IEAGenome Projecthelicase activity
GO:0008270IEAGenome Projectzinc ion binding
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000186

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAGenome Projectcytoplasm
GO:0000932ISOPLAZA Integrative Orthologycytoplasmic mRNA processing bodyAT5G47010
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G47010
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G47010
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT5G47010

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR018999RNA helicase UPF1, UPF2-interacting domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR014001Helicase, superfamily 1/2, ATP-binding domain

Mapman id Description
27.1.2RNA.processing.RNA helicase
No SignalP domains detected for this gene.