Gene: PT01G28900 (Populus trichocarpa)

Overview top

Gene Identifier
PT01G28900
Transcript Identifier
PT01G28900.1
Gene Type
Coding gene
Location
Chr01 : 29440705-29446384 : negative

Family

Gene family
HOM03D003486
(52 genes in 31 species)
specific family
Subfamily
ORTHO03D007103
(31 genes in 25 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine)
Aspartate--tRNA ligase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.001G289000.1
idPAC:27042736

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006418IEAGenome ProjecttRNA aminoacylation for protein translation
GO:0006412IEAGenome Projecttranslation

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAGenome Projectnucleotide binding
GO:0004812IEAGenome Projectaminoacyl-tRNA ligase activity
GO:0005524IEAGenome ProjectATP binding
GO:0003676IEAGenome Projectnucleic acid binding
GO:0016874IEAGenome Projectligase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAGenome Projectcytoplasm
GO:0016020ISOPLAZA Tree-based OrthologymembraneAT4G33760
GO:0009507ISOPLAZA Tree-based OrthologychloroplastAT4G33760
GO:0005739ISOPLAZA Tree-based OrthologymitochondrionAT4G33760

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR004524Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340Nucleic acid-binding, OB-fold
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR004115GAD domain
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR006195Aminoacyl-tRNA synthetase, class II
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like

Mapman id Description
29.1.12protein.aa activation.aspartate-tRNA ligase
No SignalP domains detected for this gene.