Gene: PT00G03500 (Populus trichocarpa)

Overview top

Gene Identifier
PT00G03500
Transcript Identifier
PT00G03500.1
Gene Type
Coding gene
Location
scaffold_252 : 4885-10712 : positive

Family

Gene family
HOM03D003486
(52 genes in 31 species)
specific family
Subfamily
ORTHO03D007103
(31 genes in 25 species)
specific family

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Descriptions

Description (AnnoMine)
Aspartate--tRNA ligase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.T131100.1
idPAC:26993231

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006418IEAGenome ProjecttRNA aminoacylation for protein translation
GO:0006412IEAGenome Projecttranslation

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAGenome Projectnucleotide binding
GO:0004812IEAGenome Projectaminoacyl-tRNA ligase activity
GO:0005524IEAGenome ProjectATP binding
GO:0003676IEAGenome Projectnucleic acid binding
GO:0016874IEAGenome Projectligase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAGenome Projectcytoplasm
GO:0016020ISOPLAZA Tree-based OrthologymembraneAT4G33760
GO:0009507ISOPLAZA Tree-based OrthologychloroplastAT4G33760
GO:0005739ISOPLAZA Tree-based OrthologymitochondrionAT4G33760

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR004115GAD domain
IPR012340Nucleic acid-binding, OB-fold
IPR004524Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR006195Aminoacyl-tRNA synthetase, class II
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)

Mapman id Description
29.1.12protein.aa activation.aspartate-tRNA ligase
No SignalP domains detected for this gene.