PLAZA 3.0 Dicots gene overview : PPE_001G36550

Gene: PPE_001G36550 (Prunus persica)

Overview

Gene Identifier: PPE_001G36550
Transcript Identifier: PPE_001G36550.1
Gene Type: Coding gene
Location: scaffold_1 : 32084966-32087499 : positive

Family

Gene family: HOM03D003484
(52 genes in 31 species)
specific family
Subfamily: ORTHO03D003767
(37 genes in 31 species)
specific family

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Descriptions

Description (AnnoMine): Cytoplasmic tRNA 2-thiolation protein 1

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	ppa007715m
id	PAC:17641387

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0000302	ISO	PLAZA Integrative Orthology	response to reactive oxygen species	AT2G44270
GO:0080157	ISO	PLAZA Integrative Orthology	regulation of plant-type cell wall organization or biogenesis	AT2G44270
GO:0034227	IEA	PLAZA Homology	tRNA thio-modification	HOM03D003484

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000049	IEA	PLAZA Homology	tRNA binding	HOM03D003484

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	PLAZA Homology	cytoplasm	HOM03D003484

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011063	tRNA(Ile)-lysidine/2-thiocytidine synthase
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold

Mapman id	Description
35.2	not assigned.unknown

No SignalP domains detected for this gene.