Gene: PP00028G00960 (Physcomitrella patens)

Overview top

Gene Identifier
PP00028G00960
Transcript Identifier
PP00028G00960.1
Gene Type
Coding gene
Location
scaffold_28 : 1005981-1013016 : negative

Family

Gene family
HOM03D000215
(477 genes in 30 species)
specific family
Subfamily
ORTHO03D000293
(107 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine)
Protein argonaute
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPp1s28_182V6.1
idPAC:18048896

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0019827ISOPLAZA Integrative Orthologystem cell maintenanceOS06G39640
GO:0048366ISOPLAZA Integrative Orthologyleaf developmentOS06G39640
GO:1902183ISOPLAZA Integrative Orthologyregulation of shoot apical meristem developmentAT5G43810
GO:0010586ISOPLAZA Integrative OrthologymiRNA metabolic processAT5G43810
GO:0035019ISOPLAZA Integrative Orthologysomatic stem cell maintenanceAT5G43810
GO:0048481ISOPLAZA Integrative Orthologyovule developmentAT5G21150
GO:0010529ISOPLAZA Integrative Orthologynegative regulation of transpositionAT5G21150
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT2G32940 AT2G27040
GO:0006342ISOPLAZA Integrative Orthologychromatin silencingAT2G32940 AT2G27040
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT2G32940 AT2G27040
GO:0009816ISOPLAZA Integrative Orthologydefense response to bacterium, incompatible interactionAT2G27040
GO:0031048ISOPLAZA Integrative Orthologychromatin silencing by small RNAAT2G27040
GO:0010495ISOPLAZA Integrative Orthologylong-distance posttranscriptional gene silencingAT2G27040
GO:0051567ISOPLAZA Integrative Orthologyhistone H3-K9 methylationAT2G27040
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT1G48410
GO:0009965ISOPLAZA Integrative Orthologyleaf morphogenesisAT1G48410
GO:0010305ISOPLAZA Integrative Orthologyleaf vascular tissue pattern formationAT1G48410
GO:0010589ISOPLAZA Integrative Orthologyleaf proximal/distal pattern formationAT1G48410
GO:0009955ISOPLAZA Integrative Orthologyadaxial/abaxial pattern specificationAT1G48410
GO:0045087ISOPLAZA Integrative Orthologyinnate immune responseAT1G48410
GO:0048864ISOPLAZA Integrative Orthologystem cell developmentAT1G48410
GO:0016246ISOPLAZA Integrative OrthologyRNA interferenceAT1G48410
GO:0009616ISOPLAZA Integrative Orthologyvirus induced gene silencingAT1G48410
GO:0048830ISOPLAZA Integrative Orthologyadventitious root developmentAT1G48410
GO:0010218ISOPLAZA Integrative Orthologyresponse to far red lightAT1G48410
GO:0009850ISOPLAZA Integrative Orthologyauxin metabolic processAT1G48410
GO:0035195ISOPLAZA Integrative Orthologygene silencing by miRNAAT1G48410
GO:0009733ISOPLAZA Integrative Orthologyresponse to auxinAT1G48410
GO:0016441ISOPLAZA Integrative Orthologyposttranscriptional gene silencingAT1G48410

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0003676IEAInterPronucleic acid binding
GO:0035198ISOPLAZA Integrative OrthologymiRNA bindingAT5G43810 AT1G48410
GO:0035197ISOPLAZA Integrative OrthologysiRNA bindingAT5G21150 AT2G32940 AT2G27040 AT1G48410
GO:0004521ISOPLAZA Integrative Orthologyendoribonuclease activityAT1G48410

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISOPLAZA Integrative OrthologycytoplasmOS06G39640 AT5G21150 AT1G48410
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G32940 AT1G48410
GO:0015030ISOPLAZA Integrative OrthologyCajal bodyAT2G27040
GO:0005719ISOPLAZA Integrative Orthologynuclear euchromatinAT2G27040
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G27040
GO:0019898ISOPLAZA Integrative Orthologyextrinsic to membraneAT1G48410
GO:0005829ISOPLAZA Integrative OrthologycytosolAT1G48410

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003165Stem cell self-renewal protein Piwi
IPR003100Argonaute/Dicer protein, PAZ domain
IPR014811Domain of unknown function DUF1785
IPR012337Ribonuclease H-like domain

Mapman id Description
27.3.36RNA.regulation of transcription.Argonaute
No SignalP domains detected for this gene.