PLAZA 3.0 Dicots gene overview : OS11G47700

Gene: OS11G47700 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: OS11G47700
Transcript Identifier: OS11G47700.1
Gene Type: Coding gene
Location: 11 : 28785275-28785787 : positive

Family

Gene family: HOM03D000017
(2380 genes in 31 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description: zinc finger, C3HC4 type domain containing protein, expressed

Description (AnnoMine): H2 finger protein

Identifiers

Identifier	Name
transcript_id	LOC_OS11G47700.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000017
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000017
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000017
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03D000017
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000017

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
35.2	not assigned.unknown

No SignalP domains detected for this gene.