Gene: ME06598G00430 (Manihot esculenta)

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Gene Identifier
ME06598G00430
Transcript Identifier
ME06598G00430.1
Gene Type
Coding gene
Location
scaffold06598 : 310255-314231 : negative

Family

Gene family
HOM03D000451
(280 genes in 30 species)
specific family
Subfamily
ORTHO03D000171
(140 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine)
specific demethylase 3A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
RNAnamecassava4.1_023245m
PACid17991544

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0080188ISOPLAZA Integrative OrthologyRNA-directed DNA methylationAT3G07610
GO:0070919ISOPLAZA Integrative Orthologyproduction of siRNA involved in chromatin silencing by small RNAAT3G07610
GO:0010468ISOPLAZA Integrative Orthologyregulation of gene expressionAT3G07610
GO:0033169ISOPLAZA Integrative Orthologyhistone H3-K9 demethylationAT3G07610
GO:0048366ISOPLAZA Integrative Orthologyleaf developmentAT3G07610
GO:0032776ISOPLAZA Integrative OrthologyDNA methylation on cytosineAT3G07610
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT3G07610
GO:0009555ISOPLAZA Integrative Orthologypollen developmentAT3G07610

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0031490ISOPLAZA Integrative Orthologychromatin DNA bindingAT3G07610
GO:0032454ISOPLAZA Integrative Orthologyhistone demethylase activity (H3-K9 specific)AT3G07610

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001841Zinc finger, RING-type
IPR014710RmlC-like jelly roll fold
IPR003347JmjC domain

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.