Gene: ME00621G00020 (Manihot esculenta)

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Gene Identifier
ME00621G00020
Transcript Identifier
ME00621G00020.1
Gene Type
Coding gene
Location
scaffold00621 : 33933-40860 : negative

Family

Gene family
HOM03D002186
(79 genes in 31 species)
specific family
Subfamily
ORTHO03D008477
(29 genes in 25 species)
specific family

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Descriptions

Description (AnnoMine)
directed RNA polymerases IV and V subunit 4
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
RNAnamecassava4.1_015745m
PACid17972757

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0044237IEAInterProcellular metabolic process
GO:0006351IEAInterProtranscription, DNA-templated
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT4G15950
GO:0010426ISOPLAZA Integrative OrthologyDNA methylation on cytosine within a CHH sequenceAT4G15950
GO:0016246ISOPLAZA Integrative OrthologyRNA interferenceAT4G15950

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAInterPronucleotide binding
GO:0003899IEAInterProDNA-directed RNA polymerase activity
GO:0003824IEAInterProcatalytic activity
GO:0003676IEAInterPronucleic acid binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D002186

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAInterProintracellular
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G15950
GO:0000419ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT4G15950
GO:0000418ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT4G15950

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR010997HRDC-like
IPR002121HRDC domain
IPR005574RNA polymerase II, Rpb4
IPR006590RNA polymerase II, Rpb4, core

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.