PLAZA 3.0 Dicots gene overview : MD15G016490

Gene: MD15G016490 (Malus domestica)

Overview

Gene Identifier: MD15G016490
Transcript Identifier: MD15G16490.1
Gene Type: Coding gene
Location: 15 : 16284317-16285339 : positive

Family

Gene family: HOM03D000021
(2196 genes in 29 species)
specific family
Subfamily: ORTHO03D010245
(26 genes in 11 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): endo-1,3-beta-glucosidase, basic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	MDP0000918948

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	InterPro	carbohydrate metabolic process
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000021
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000021
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000021

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003824	IEA	InterPro	catalytic activity
GO:0004553	IEA	InterPro	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004338	ISO	PLAZA Integrative Orthology	glucan exo-1,3-beta-glucosidase activity	AT5G20340
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000021
GO:0016798	IEA	PLAZA Homology	hydrolase activity, acting on glycosyl bonds	HOM03D000021

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000490	Glycoside hydrolase, family 17
IPR017853	Glycoside hydrolase, superfamily
IPR013781	Glycoside hydrolase, catalytic domain

Mapman id	Description
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network