Gene: MD08G020430 (Malus domestica)

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Gene Identifier
MD08G020430
Transcript Identifier
MD8G20430.1
Gene Type
Coding gene
Location
8 : 26660067-26669815 : positive

Family

Gene family
HOM03D002780
(65 genes in 31 species)
specific family
Subfamily
ORTHO03D001594
(48 genes in 29 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Regulator of nonsense transcripts UPF3
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidMDP0000120269

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0009863ISOPLAZA Integrative Orthologysalicylic acid mediated signaling pathwayAT1G33980
GO:0048571ISOPLAZA Integrative Orthologylong-day photoperiodismAT1G33980
GO:0009611ISOPLAZA Integrative Orthologyresponse to woundingAT1G33980
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT1G33980
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT1G33980
GO:0000184ISOPLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decayAT1G33980

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700IEAInterProsequence-specific DNA binding transcription factor activity
GO:0000166IEAInterPronucleotide binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D002780

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAInterPronucleus
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT1G33980

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005120Regulator of nonsense-mediated decay, UPF3
IPR002487Transcription factor, K-box
IPR012677Nucleotide-binding, alpha-beta plait

Mapman id Description
27.3.24RNA.regulation of transcription.MADS box transcription factor family
No SignalP domains detected for this gene.