PLAZA 3.0 Dicots gene overview : MD00G412880

Gene: MD00G412880 (Malus domestica)

Overview

Gene Identifier: MD00G412880
Transcript Identifier: MD00G412880.1
Gene Type: Coding gene
Location: MDC018808.206 : 8997-12287 : positive

Family

Gene family: HOM03D002786
(65 genes in 31 species)
specific family
Subfamily: ORTHO03D001319
(53 genes in 31 species)
specific family

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Descriptions

Description (AnnoMine): Leucine--tRNA ligase, cytoplasmic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	MDP0000810744

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006429	IEA	InterPro	leucyl-tRNA aminoacylation
GO:0006418	IEA	InterPro	tRNA aminoacylation for protein translation

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0002161	IEA	InterPro	aminoacyl-tRNA editing activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0004823	IEA	InterPro	leucine-tRNA ligase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0004812	IEA	InterPro	aminoacyl-tRNA ligase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	InterPro	cytoplasm
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT1G09620
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT1G09620
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT1G09620

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013155	Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding
IPR009080	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
IPR009008	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain
IPR002300	Aminoacyl-tRNA synthetase, class Ia
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
IPR004493	Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic
IPR001412	Aminoacyl-tRNA synthetase, class I, conserved site

Mapman id	Description
29.1.4	protein.aa activation.leucine-tRNA ligase

No SignalP domains detected for this gene.