PLAZA 3.0 Dicots gene overview : MD00G376000

Gene: MD00G376000 (Malus domestica)

Overview

Gene Identifier: MD00G376000
Transcript Identifier: MD00G376000.1
Gene Type: Coding gene
Location: MDC017037.229 : 3936-12654 : positive

Family

Gene family: HOM03D001051
(143 genes in 31 species)
specific family
Subfamily: ORTHO03D007643
(31 genes in 27 species)
specific family

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Descriptions

Description (AnnoMine): Pentatricopeptide repeat-containing protein

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	MDP0000301820

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0000049	IEA	InterPro	tRNA binding
GO:0000166	IEA	InterPro	nucleotide binding
GO:0003676	IEA	InterPro	nucleic acid binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISO	PLAZA Tree-based Orthology	chloroplast	AT3G59980

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR012677	Nucleotide-binding, alpha-beta plait
IPR000504	RNA recognition motif domain
IPR002547	tRNA-binding domain
IPR012340	Nucleic acid-binding, OB-fold
IPR011990	Tetratricopeptide-like helical

Mapman id	Description
35.1.5	not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein

No SignalP domains detected for this gene.