PLAZA 3.0 Dicots gene overview : MD00G340260

Gene: MD00G340260 (Malus domestica)

Overview

Gene Identifier: MD00G340260
Transcript Identifier: MD00G340260.1
Gene Type: Coding gene
Location: MDC015174.151 : 6376-8570 : positive

Family

Gene family: HOM03D002095
(82 genes in 30 species)
specific family
Subfamily: ORTHO03D002768
(40 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine): Chromoplast-specific carotenoid-associated protein, chromoplast

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	MDP0000294406

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010205	ISO	PLAZA Integrative Orthology	photoinhibition	AT4G04020
GO:0009409	ISO	PLAZA Integrative Orthology	response to cold	AT4G04020
GO:0009737	ISO	PLAZA Integrative Orthology	response to abscisic acid	AT4G04020

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005198	IEA	InterPro	structural molecule activity
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT4G04020

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IEA	InterPro	chloroplast
GO:0009534	ISO	PLAZA Integrative Orthology	chloroplast thylakoid	AT4G22240 AT4G04020
GO:0010287	ISO	PLAZA Integrative Orthology	plastoglobule	AT4G22240 AT4G04020
GO:0009535	ISO	PLAZA Integrative Orthology	chloroplast thylakoid membrane	AT4G22240 AT4G04020 ST02G024280
GO:0031977	ISO	PLAZA Integrative Orthology	thylakoid lumen	AT4G22240 AT4G04020
GO:0009579	ISO	PLAZA Integrative Orthology	thylakoid	AT4G22240 AT4G04020
GO:0010319	ISO	PLAZA Integrative Orthology	stromule	AT4G04020
GO:0009570	ISO	PLAZA Integrative Orthology	chloroplast stroma	AT4G04020
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT4G04020

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain

Mapman id	Description
31.1	cell.organisation

No SignalP domains detected for this gene.