Gene: MD00G085940 (Malus domestica)

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Gene Identifier
MD00G085940
Transcript Identifier
MD00G85940.1
Gene Type
Coding gene
Location
MDC003654.280 : 21805-30614 : positive

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family
Subfamily
ORTHO03D000373
(95 genes in 28 species)
specific family

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Descriptions

Description (AnnoMine)
Phytochrome A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidMDP0000170095

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0006412IEAInterProtranslation
GO:0006418IEAInterProtRNA aminoacylation for protein translation
GO:0009584IEAInterProdetection of visible light
GO:0007165IEAInterProsignal transduction
GO:0018298IEAInterProprotein-chromophore linkage
GO:0006424IEAInterProglutamyl-tRNA aminoacylation
GO:0043039IEAInterProtRNA aminoacylation
GO:0010017ISOPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010202ISOPLAZA Integrative Orthologyresponse to low fluence red light stimulusAT2G18790
GO:0010218ISOPLAZA Integrative Orthologyresponse to far red lightAT2G18790
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT2G18790 AT1G09570
GO:0006325ISOPLAZA Integrative Orthologychromatin organizationAT2G18790
GO:0015979ISOPLAZA Integrative OrthologyphotosynthesisAT2G18790
GO:0010148ISOPLAZA Integrative OrthologytranspirationAT2G18790
GO:0010374ISOPLAZA Integrative Orthologystomatal complex developmentAT2G18790
GO:0031347ISOPLAZA Integrative Orthologyregulation of defense responseAT2G18790
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0010161ISOPLAZA Integrative Orthologyred light signaling pathwayAT2G18790 AT1G09570
GO:0010617ISOPLAZA Integrative Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0010029ISOPLAZA Integrative Orthologyregulation of seed germinationAT2G18790
GO:0009687ISOPLAZA Integrative Orthologyabscisic acid metabolic processAT2G18790
GO:0009630ISOPLAZA Integrative OrthologygravitropismAT2G18790 AT1G09570
GO:0009638ISOPLAZA Integrative OrthologyphototropismAT2G18790 AT1G09570
GO:0009649ISOPLAZA Integrative Orthologyentrainment of circadian clockAT2G18790
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT2G18790
GO:0010203ISOPLAZA Integrative Orthologyresponse to very low fluence red light stimulusAT1G09570
GO:0010201ISOPLAZA Integrative Orthologyresponse to continuous far red light stimulus by the high-irradiance response systemAT1G09570
GO:0017148ISOPLAZA Integrative Orthologynegative regulation of translationAT1G09570
GO:0046685ISOPLAZA Integrative Orthologyresponse to arsenic-containing substanceAT1G09570
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0004818IEAInterProglutamate-tRNA ligase activity
GO:0005524IEAInterProATP binding
GO:0000155IEAInterProphosphorelay sensor kinase activity
GO:0004812IEAInterProaminoacyl-tRNA ligase activity
GO:0000166IEAInterPronucleotide binding
GO:0004871IEAInterProsignal transducer activity
GO:0016876IEAInterProligase activity, forming aminoacyl-tRNA and related compounds
GO:0009883ISOPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT4G16250 AT2G18790 AT1G09570
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT4G16250 AT2G18790 AT1G09570
GO:0031517ISOPLAZA Integrative Orthologyred light photoreceptor activityAT2G18790
GO:0031516ISOPLAZA Integrative Orthologyfar-red light photoreceptor activityAT2G18790 AT1G09570
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAInterProcytoplasm
GO:0016020IEAInterPromembrane
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G16250 AT2G18790 AT1G09570
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G18790 AT1G09570
GO:0005829ISOPLAZA Integrative OrthologycytosolAT2G18790

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003018GAF domain
IPR001294Phytochrome
IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
IPR014729Rossmann-like alpha/beta/alpha sandwich fold
IPR000014PAS domain
IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR000924Glutamyl/glutaminyl-tRNA synthetase
IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
IPR004526Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolic
IPR013654PAS fold-2
IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
IPR010987Glutathione S-transferase, C-terminal-like
IPR013767PAS fold
IPR013515Phytochrome, central region
IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
IPR013516Phytochrome chromophore binding site
IPR005467Signal transduction histidine kinase, core
IPR016132Phytochrome chromophore attachment domain

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.