PLAZA 3.0 Dicots gene overview : MD00G005880

Gene: MD00G005880 (Malus domestica)

Overview

Gene Identifier: MD00G005880
Transcript Identifier: MD00G05880.1
Gene Type: Coding gene
Location: MDC000215.106 : 17492-19832 : negative

Family

Gene family: HOM03D002668
(68 genes in 30 species)
specific family
Subfamily: ORTHO03D003075
(39 genes in 28 species)
specific family

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Descriptions

Description (AnnoMine): Probable E3 ubiquitin ligase SUD1

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	MDP0000756994

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:1900490	ISO	PLAZA Tree-based Orthology	positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity	AT4G34100
GO:0009414	ISO	PLAZA Tree-based Orthology	response to water deprivation	AT4G34100
GO:0008299	ISO	PLAZA Tree-based Orthology	isoprenoid biosynthetic process	AT4G34100
GO:0010345	ISO	PLAZA Tree-based Orthology	suberin biosynthetic process	AT4G34100
GO:0010143	ISO	PLAZA Tree-based Orthology	cutin biosynthetic process	AT4G34100
GO:0010025	ISO	PLAZA Tree-based Orthology	wax biosynthetic process	AT4G34100

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004842	ISO	PLAZA Tree-based Orthology	ubiquitin-protein ligase activity	AT4G34100
GO:0008270	IEA	PLAZA Homology	zinc ion binding	HOM03D002668

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.