PLAZA 3.0 Dicots gene overview : LJCG00060

Gene: LJCG00060 (Lotus japonicus)

Overview

Gene Identifier: LJCG00060
Transcript Identifier: LJCG00060.1
Gene Type: Coding gene
Location: chloroplast : 7367-8863 : positive

Family

Gene family: HOM03D000513
(253 genes in 30 species)
specific family
Subfamily: ORTHO03D001445
(50 genes in 27 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description: ATP synthase subunit beta, chloroplastic

Description (AnnoMine): ATP synthase subunit beta

Identifiers

Identifier	Name
GeneName	atpB
GeneName	ATPase beta subunit
pid	BAB33179.1
uniprot	Q9BBU0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0015986	IEA	InterPro	ATP synthesis coupled proton transport
GO:0046034	IEA	InterPro	ATP metabolic process
GO:0015991	IEA	UniProt	ATP hydrolysis coupled proton transport	1
GO:0015992	IEA	InterPro	proton transport
GO:0042777	IEA	UniProt	plasma membrane ATP synthesis coupled proton transport	1
GO:0009817	ISO	PLAZA Integrative Orthology	defense response to fungus, incompatible interaction	ATCG00480
GO:0009409	ISO	PLAZA Integrative Orthology	response to cold	ATCG00480
GO:0046129	IEA	PLAZA Homology	purine ribonucleoside biosynthetic process	HOM03D000513
GO:0009201	IEA	PLAZA Homology	ribonucleoside triphosphate biosynthetic process	HOM03D000513
GO:0009206	IEA	PLAZA Homology	purine ribonucleoside triphosphate biosynthetic process	HOM03D000513
GO:0009205	IEA	PLAZA Homology	purine ribonucleoside triphosphate metabolic process	HOM03D000513
GO:0046128	IEA	PLAZA Homology	purine ribonucleoside metabolic process	HOM03D000513
GO:0006753	IEA	PLAZA Homology	nucleoside phosphate metabolic process	HOM03D000513
GO:0006754	IEA	PLAZA Homology	ATP biosynthetic process	HOM03D000513
GO:0042455	IEA	PLAZA Homology	ribonucleoside biosynthetic process	HOM03D000513
GO:0042451	IEA	PLAZA Homology	purine nucleoside biosynthetic process	HOM03D000513
GO:1901293	IEA	PLAZA Homology	nucleoside phosphate biosynthetic process	HOM03D000513
GO:0019637	IEA	PLAZA Homology	organophosphate metabolic process	HOM03D000513
GO:0019693	IEA	PLAZA Homology	ribose phosphate metabolic process	HOM03D000513
GO:0009260	IEA	PLAZA Homology	ribonucleotide biosynthetic process	HOM03D000513
GO:0009123	IEA	PLAZA Homology	nucleoside monophosphate metabolic process	HOM03D000513
GO:0006818	IEA	PLAZA Homology	hydrogen transport	HOM03D000513
GO:0009124	IEA	PLAZA Homology	nucleoside monophosphate biosynthetic process	HOM03D000513
GO:0009126	IEA	PLAZA Homology	purine nucleoside monophosphate metabolic process	HOM03D000513
GO:0009127	IEA	PLAZA Homology	purine nucleoside monophosphate biosynthetic process	HOM03D000513
GO:0006812	IEA	PLAZA Homology	cation transport	HOM03D000513
GO:0006811	IEA	PLAZA Homology	ion transport	HOM03D000513
GO:0042278	IEA	PLAZA Homology	purine nucleoside metabolic process	HOM03D000513
GO:0009199	IEA	PLAZA Homology	ribonucleoside triphosphate metabolic process	HOM03D000513
GO:0055086	IEA	PLAZA Homology	nucleobase-containing small molecule metabolic process	HOM03D000513
GO:0015672	IEA	PLAZA Homology	monovalent inorganic cation transport	HOM03D000513
GO:0046390	IEA	PLAZA Homology	ribose phosphate biosynthetic process	HOM03D000513
GO:0072521	IEA	PLAZA Homology	purine-containing compound metabolic process	HOM03D000513
GO:0072522	IEA	PLAZA Homology	purine-containing compound biosynthetic process	HOM03D000513
GO:0009116	IEA	PLAZA Homology	nucleoside metabolic process	HOM03D000513
GO:0009119	IEA	PLAZA Homology	ribonucleoside metabolic process	HOM03D000513
GO:0006163	IEA	PLAZA Homology	purine nucleotide metabolic process	HOM03D000513
GO:0009259	IEA	PLAZA Homology	ribonucleotide metabolic process	HOM03D000513
GO:0009117	IEA	PLAZA Homology	nucleotide metabolic process	HOM03D000513
GO:0006164	IEA	PLAZA Homology	purine nucleotide biosynthetic process	HOM03D000513
GO:0009145	IEA	PLAZA Homology	purine nucleoside triphosphate biosynthetic process	HOM03D000513
GO:0009144	IEA	PLAZA Homology	purine nucleoside triphosphate metabolic process	HOM03D000513
GO:0009142	IEA	PLAZA Homology	nucleoside triphosphate biosynthetic process	HOM03D000513
GO:0009141	IEA	PLAZA Homology	nucleoside triphosphate metabolic process	HOM03D000513
GO:0034220	IEA	PLAZA Homology	ion transmembrane transport	HOM03D000513
GO:0015988	IEA	PLAZA Homology	energy coupled proton transmembrane transport, against electrochemical gradient	HOM03D000513
GO:0015985	IEA	PLAZA Homology	energy coupled proton transport, down electrochemical gradient	HOM03D000513
GO:1901657	IEA	PLAZA Homology	glycosyl compound metabolic process	HOM03D000513
GO:1901659	IEA	PLAZA Homology	glycosyl compound biosynthetic process	HOM03D000513
GO:0009168	IEA	PLAZA Homology	purine ribonucleoside monophosphate biosynthetic process	HOM03D000513
GO:0009163	IEA	PLAZA Homology	nucleoside biosynthetic process	HOM03D000513
GO:0009161	IEA	PLAZA Homology	ribonucleoside monophosphate metabolic process	HOM03D000513
GO:0009167	IEA	PLAZA Homology	purine ribonucleoside monophosphate metabolic process	HOM03D000513
GO:0009165	IEA	PLAZA Homology	nucleotide biosynthetic process	HOM03D000513
GO:0090407	IEA	PLAZA Homology	organophosphate biosynthetic process	HOM03D000513
GO:0009150	IEA	PLAZA Homology	purine ribonucleotide metabolic process	HOM03D000513
GO:1901137	IEA	PLAZA Homology	carbohydrate derivative biosynthetic process	HOM03D000513
GO:0009152	IEA	PLAZA Homology	purine ribonucleotide biosynthetic process	HOM03D000513
GO:1901135	IEA	PLAZA Homology	carbohydrate derivative metabolic process	HOM03D000513
GO:0009156	IEA	PLAZA Homology	ribonucleoside monophosphate biosynthetic process	HOM03D000513

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0017111	IEA	InterPro	nucleoside-triphosphatase activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0046933	IEA	UniProt	proton-transporting ATP synthase activity, rotational mechanism	1
GO:0016820	IEA	InterPro	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0005524	IEA	UniProt	ATP binding	1
GO:0008270	ISO	PLAZA Integrative Orthology	zinc ion binding	ATCG00480
GO:0015078	ISO	PLAZA Integrative Orthology	hydrogen ion transmembrane transporter activity	ATCG00480
GO:0008324	IEA	PLAZA Homology	cation transmembrane transporter activity	HOM03D000513
GO:0015077	IEA	PLAZA Homology	monovalent inorganic cation transmembrane transporter activity	HOM03D000513
GO:0022890	IEA	PLAZA Homology	inorganic cation transmembrane transporter activity	HOM03D000513
GO:0042623	IEA	PLAZA Homology	ATPase activity, coupled	HOM03D000513
GO:0042626	IEA	PLAZA Homology	ATPase activity, coupled to transmembrane movement of substances	HOM03D000513
GO:0042625	IEA	PLAZA Homology	ATPase activity, coupled to transmembrane movement of ions	HOM03D000513
GO:0044769	IEA	PLAZA Homology	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	HOM03D000513
GO:0015399	IEA	PLAZA Homology	primary active transmembrane transporter activity	HOM03D000513
GO:0015405	IEA	PLAZA Homology	P-P-bond-hydrolysis-driven transmembrane transporter activity	HOM03D000513
GO:0043492	IEA	PLAZA Homology	ATPase activity, coupled to movement of substances	HOM03D000513
GO:0022804	IEA	PLAZA Homology	active transmembrane transporter activity	HOM03D000513
GO:0016887	IEA	PLAZA Homology	ATPase activity	HOM03D000513
GO:0019829	IEA	PLAZA Homology	cation-transporting ATPase activity	HOM03D000513

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0033178	IEA	InterPro	proton-transporting two-sector ATPase complex, catalytic domain
GO:0009535	IEA	UniProt	chloroplast thylakoid membrane	1
GO:0045261	IEA	UniProt	proton-transporting ATP synthase complex, catalytic core F(1)	1
GO:0010319	ISO	PLAZA Integrative Orthology	stromule	ATCG00480
GO:0010287	ISO	PLAZA Integrative Orthology	plastoglobule	ATCG00480
GO:0005618	ISO	PLAZA Integrative Orthology	cell wall	ATCG00480
GO:0031977	ISO	PLAZA Integrative Orthology	thylakoid lumen	ATCG00480
GO:0005754	ISO	PLAZA Integrative Orthology	mitochondrial proton-transporting ATP synthase, catalytic core	ATCG00480
GO:0045259	IEA	PLAZA Homology	proton-transporting ATP synthase complex	HOM03D000513
GO:0016469	IEA	PLAZA Homology	proton-transporting two-sector ATPase complex	HOM03D000513
GO:0009579	ISO	PLAZA Integrative Orthology	thylakoid	ATCG00480
GO:0009570	ISO	PLAZA Integrative Orthology	chloroplast stroma	ATCG00480
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	ATCG00480
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	ATCG00480
GO:0009534	ISO	PLAZA Integrative Orthology	chloroplast thylakoid	ATCG00480

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR005722	ATPase, F1 complex, beta subunit
IPR004100	ATPase, F1 complex alpha/beta subunit, N-terminal domain
IPR024034	ATPase, F1 complex beta subunit/V1 complex, C-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR003593	AAA+ ATPase domain
IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain
IPR000793	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.