Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene: LJ2G043530 (Lotus japonicus)
Overview 
- Gene Identifier
- LJ2G043530
- Transcript Identifier
- LJ2G043530.1
- Gene Type
- Coding gene
- Location
- chr2 : 37943367-37949630 : positive
Family
- Gene family
- Subfamily
Descriptions
- Description (AnnoMine)
-
protein ligase COP1
Description of best ortholog(s):
Identifiers
| Identifier | Name |
|---|---|
| name | chr2.CM1285.350.r2.d |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0009641 | ISO | PLAZA Integrative Orthology | shade avoidance | AT2G32950 |
| GO:0009649 | ISO | PLAZA Integrative Orthology | entrainment of circadian clock | AT2G32950 |
| GO:0006281 | ISO | PLAZA Integrative Orthology | DNA repair | AT2G32950 |
| GO:0046283 | ISO | PLAZA Integrative Orthology | anthocyanin-containing compound metabolic process | AT2G32950 |
| GO:0048573 | ISO | PLAZA Integrative Orthology | photoperiodism, flowering | AT2G32950 |
| GO:0010119 | ISO | PLAZA Integrative Orthology | regulation of stomatal movement | AT2G32950 |
| GO:0009647 | ISO | PLAZA Integrative Orthology | skotomorphogenesis | AT2G32950 |
| GO:0009640 | ISO | PLAZA Integrative Orthology | photomorphogenesis | AT2G32950 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0004842 | ISO | PLAZA Integrative Orthology | ubiquitin-protein ligase activity | AT2G32950 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G32950 |
| GO:0043167 | IEA | PLAZA Homology | ion binding | HOM03D000613 |
| GO:0003824 | IEA | PLAZA Homology | catalytic activity | HOM03D000613 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT2G32950 |
| GO:0000152 | ISO | PLAZA Integrative Orthology | nuclear ubiquitin ligase complex | AT2G32950 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G32950 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
No InterPro domains detected for this gene.
No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.