Gene: GR13G16140 (Gossypium raimondii)

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Gene Identifier
GR13G16140
Transcript Identifier
GR13G16140.1
Gene Type
Coding gene
Location
Chr13 : 43882742-43886292 : positive

Family

Gene family
HOM03D001803
(93 genes in 31 species)
specific family
Subfamily
ORTHO03D001466
(50 genes in 27 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description (AnnoMine)
Tryptophan synthase beta chain
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidGorai.013G161400.1
idPAC:26789212

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008152IEAGenome Projectmetabolic process
GO:0000162IEAInterProtryptophan biosynthetic process
GO:0006568IEAInterProtryptophan metabolic process
GO:0009684ISOPLAZA Integrative Orthologyindoleacetic acid biosynthetic processAT5G54810
GO:0006979ISOPLAZA Integrative Orthologyresponse to oxidative stressAT5G54810
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT5G54810
GO:0046219IEAPLAZA Homologyindolalkylamine biosynthetic processHOM03D001803
GO:0006586IEAPLAZA Homologyindolalkylamine metabolic processHOM03D001803

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003824IEAGenome Projectcatalytic activity
GO:0030170IEAGenome Projectpyridoxal phosphate binding
GO:0004834IEAInterProtryptophan synthase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT5G54810 AT4G27070
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT5G54810
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT5G54810 AT4G27070
GO:0009941ISOPLAZA Integrative Orthologychloroplast envelopeAT4G27070

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
IPR023026Tryptophan synthase beta chain/beta chain-like
IPR006654Tryptophan synthase, beta chain
IPR006653Tryptophan synthase, beta chain, conserved site

Mapman id Description
13.1.6.5.5amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase
No SignalP domains detected for this gene.