PLAZA 3.0 Dicots gene overview : GR06G02760

Gene: GR06G02760 (Gossypium raimondii)

Overview

Gene Identifier: GR06G02760
Transcript Identifier: GR06G02760.1
Gene Type: Coding gene
Location: Chr06 : 7138450-7141396 : positive

Family

Gene family: HOM03D000026
(2090 genes in 31 species)
specific family
Subfamily: ORTHO03D002171
(43 genes in 27 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Putative peptide/nitrate transporter At3g01350

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Gorai.006G027600.2
id	PAC:26829680

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006857	IEA	Genome Project	oligopeptide transport
GO:0055085	IEA	Genome Project	transmembrane transport
GO:0006810	IEA	InterPro	transport
GO:0009624	ISO	PLAZA Integrative Orthology	response to nematode	AT5G14940
GO:0042886	IEA	PLAZA Homology	amide transport	HOM03D000026
GO:0044765	IEA	PLAZA Homology	single-organism transport	HOM03D000026
GO:0071705	IEA	PLAZA Homology	nitrogen compound transport	HOM03D000026
GO:0015833	IEA	PLAZA Homology	peptide transport	HOM03D000026
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000026
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03D000026
GO:0071702	IEA	PLAZA Homology	organic substance transport	HOM03D000026
GO:0051179	IEA	PLAZA Homology	localization	HOM03D000026

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005215	IEA	Genome Project	transporter activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016020	IEA	Genome Project	membrane
GO:0016021	IEA	Genome Project	integral to membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR016196	Major facilitator superfamily domain, general substrate transporter
IPR000109	Proton-dependent oligopeptide transporter family

Mapman id	Description
34.13	transport.peptides and oligopeptides

No SignalP domains detected for this gene.