PLAZA 3.0 Dicots gene overview : FV5G28110

Gene: FV5G28110 (Fragaria vesca)

Overview

Gene Identifier: FV5G28110
Transcript Identifier: FV5G28110.1
Gene Type: Coding gene
Location: LG5 : 19573469-19574311 : positive

Family

Gene family: HOM03D001047
(143 genes in 31 species)
specific family
Subfamily: ORTHO03D012092
(21 genes in 20 species)
specific family

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Descriptions

Description: Splicing factor U2af small subunit B (U2 snRNP auxiliary factor small subunit B) (similar to)

Description (AnnoMine): U2af small subunit B

Identifiers

Identifier	Name
pid	gene29156

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0048573	ISO	PLAZA Integrative Orthology	photoperiodism, flowering	AT5G42820 AT1G27650

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000166	IEA	InterPro	nucleotide binding
GO:0003723	IEA	InterPro	RNA binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0046872	IEA	InterPro	metal ion binding
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D001047

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	InterPro	nucleus

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR009145	U2 auxiliary factor small subunit
IPR000571	Zinc finger, CCCH-type
IPR012677	Nucleotide-binding, alpha-beta plait
IPR000504	RNA recognition motif domain
IPR003954	RNA recognition motif domain, eukaryote

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.