PLAZA 3.0 Dicots gene overview : EG0010G19530

Gene: EG0010G19530 (Eucalyptus grandis)

Overview

Gene Identifier: EG0010G19530
Transcript Identifier: EG0010G19530.1
Gene Type: Coding gene
Location: scaffold_10 : 28378394-28378738 : positive

Family

Gene family: HOM03D000083
(1103 genes in 29 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine): LOB domain-containing protein 6

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
GeneName	Eucgr.J02250
id	PAC:23600346

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	InterPro	regulation of transcription, DNA-dependent

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000981	IEA	InterPro	sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0008270	IEA	InterPro	zinc ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	InterPro	nucleus

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR004883	Lateral organ boundaries, LOB
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain

Mapman id	Description
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family

No SignalP domains detected for this gene.

Database	Type
PlantTFDB	LBD