PLAZA 3.0 Dicots gene overview : CS00162G00200

Gene: CS00162G00200 (Citrus sinensis)

Overview

Gene Identifier: CS00162G00200
Transcript Identifier: CS00162G00200.1
Gene Type: Coding gene
Location: scaffold00162 : 170710-171384 : positive

Family

Gene family: HOM03D000067
(1271 genes in 31 species)
specific family

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Descriptions

Description (AnnoMine): H2 finger protein

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	orange1.1g037450m
id	PAC:18098285

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Genome Project	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0047134	IEA	Genome Project	protein-disulfide reductase activity
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000067
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000067
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000067
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03D000067
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000067

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
35.2	not assigned.unknown

No SignalP domains detected for this gene.