Gene: CS00106G00310 (Citrus sinensis)

Overview top

Gene Identifier
CS00106G00310
Transcript Identifier
CS00106G00310.1
Gene Type
Coding gene
Location
scaffold00106 : 411407-414344 : positive

Family

Gene family
HOM03D001110
(138 genes in 31 species)
specific family
Subfamily
ORTHO03D009178
(28 genes in 22 species)
specific family

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Descriptions

Description (AnnoMine)
Asparagine--tRNA ligase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidorange1.1g008405m
idPAC:18104916

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006418IEAGenome ProjecttRNA aminoacylation for protein translation
GO:0006412IEAGenome Projecttranslation
GO:0006421IEAInterProasparaginyl-tRNA aminoacylation
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT5G56680
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT5G56680
GO:0043038IEAPLAZA Homologyamino acid activationHOM03D001110
GO:0043039IEAPLAZA HomologytRNA aminoacylationHOM03D001110

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676IEAGenome Projectnucleic acid binding
GO:0005524IEAGenome ProjectATP binding
GO:0004812IEAGenome Projectaminoacyl-tRNA ligase activity
GO:0000166IEAGenome Projectnucleotide binding
GO:0004816IEAInterProasparagine-tRNA ligase activity
GO:0016875IEAPLAZA Homologyligase activity, forming carbon-oxygen bondsHOM03D001110
GO:0016876IEAPLAZA Homologyligase activity, forming aminoacyl-tRNA and related compoundsHOM03D001110

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEAGenome Projectcytoplasm
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G56680 AT1G70980
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT5G56680 AT3G07420
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT5G56680 AT3G07420

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR006195Aminoacyl-tRNA synthetase, class II
IPR000738WHEP-TRS
IPR012340Nucleic acid-binding, OB-fold
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR004522Asparagine-tRNA ligase
IPR009068S15/NS1, RNA-binding
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like

Mapman id Description
29.1.22protein.aa activation.asparagine-tRNA ligase
No SignalP domains detected for this gene.